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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4579284_4581189_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4579284 - 4581189
Intron Length:
1906

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGTAACT
5'SS Class:
major
3'SS Sequence:
TCATTCCCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTTCATT
Flanking Amino Acid:
FRSTAAEVQQVLNRYMSTPL
Intron Amino Acid Position:
413

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.6
0.25
1.2
63
41.1
Major BPS
100
1.24
0.5
100
0
Major PPT
79.7
0.67
0.8
73.3
31.6
Minor 5ss
31.1
-2.2
3
42.4
43.9
Minor BPS
67.5
0.63
1.7
86.64
33.8

Associated Gene:

Gene:
ESRP2
Ensembl Gene ID:
ENSAPLG00000004479
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032649
4553134 - 4596142
43009
ENSAPLT00000027811
4553134 - 4591330
38197
ENSAPLT00000004794
4553134 - 4593106
39973