About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4583961_4584984_F

Intron Information:

Intron Rank:
13
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
4583961 - 4584984
Intron Length:
1024

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCCTCT
5'SS Class:
weak_major
3'SS Sequence:
GTTTCTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GTTTTCATAACA
Flanking Amino Acid:
LYMNYTAYYPSPPVSPTTVG
Intron Amino Acid Position:
617

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.2
0.41
1.2
63.4
43.7
Major BPS
100
1.24
0.5
100
0
Major PPT
87.7
0.85
0.7
85.1
29.7
Minor 5ss
53.5
0.12
2.8
74.9
41
Minor BPS
70.9
0.65
1.6
81.02
33.9

Associated Gene:

Gene:
ESRP2
Ensembl Gene ID:
ENSAPLG00000004479
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032649
4553134 - 4596142
43009
ENSAPLT00000027811
4553134 - 4591330
38197
ENSAPLT00000004794
4553134 - 4593106
39973