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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4585163_4591288_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4585163 - 4591288
Intron Length:
6126

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTATG
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTATTA
Flanking Amino Acid:
EILSFFQGYQA*
Intron Amino Acid Position:
677

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
1.1
83
36.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
86.2
0.81
0.7
85.1
29.7
Minor 5ss
35.7
-1.6
2.6
42.8
44.1
Minor BPS
59.9
0.31
1.8
75.92
35.5

Associated Gene:

Gene:
ESRP2
Ensembl Gene ID:
ENSAPLG00000004479
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027811
4553134 - 4591330
38197