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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4585163_4592994_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4585163 - 4592994
Intron Length:
7832

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTATG
5'SS Class:
strong_major
3'SS Sequence:
ACTTGTACTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTTATCATATAT
Flanking Amino Acid:
EILSFFQGYQYAPDDYNGLI
Intron Amino Acid Position:
677

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
1.1
83
36.1
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
70
0.45
0.9
63.6
37.5
Minor 5ss
35.7
-1.6
2.6
42.8
44.1
Minor BPS
48.7
-0
2
74.87
41.4

Associated Gene:

Gene:
ESRP2
Ensembl Gene ID:
ENSAPLG00000004479
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004794
4553134 - 4593106
39973