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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4620228_4637419_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4620228 - 4637419
Intron Length:
17192

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAA
U12 Branch Point Sequence:
AGTATAAAAACA
Flanking Amino Acid:
IGLQDITLDDVNEIIGRDMS
Intron Amino Acid Position:
1049

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
70.7
41.3
Major BPS
65.3
0.38
1
71.6
30.1
Major PPT
91.1
0.93
0.6
88.3
21.4
Minor 5ss
38.9
-1.2
2.8
45.8
44.3
Minor BPS
41.4
-0.6
2
53.41
38.1

Associated Gene:

Gene:
NFATC3
Ensembl Gene ID:
ENSAPLG00000004470
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004589
4620103 - 4682869
62767