Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4628863_4637419_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4628863 - 4637419

Intron Length:

8557

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGCAGA

5'SS Class:

strong_major

3'SS Sequence:

TTCTCTGACACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAGTTAT

U12 Branch Point Sequence:

TCTTCTCTGACA

Flanking Amino Acid:

IGLQDITLDDDSFISDLEYQ

Intron Amino Acid Position:

1049

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.7

0.75

70.7

41.3

Major BPS

73.5

0.58

1.2

63.7

43.9

Major PPT

73.1

0.52

0.9

68.4

36.5

Minor 5ss

38.9

-1.2

2.8

45.8

44.3

Minor BPS

63.8

0.43

1.7

74.9

36.7

Associated Gene:

Gene:

NFATC3

Ensembl Gene ID:

ENSAPLG00000004470

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042261

4620103 - 4682869

62767