Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4644502_4645657_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4644502 - 4645657

Intron Length:

1156

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACATTGC

5'SS Class:

major

3'SS Sequence:

CACCTGTCTCCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTAAT

U12 Branch Point Sequence:

TCTCTTCTAATC

Flanking Amino Acid:

PLLPENNMSASIDCAGILKL

Intron Amino Acid Position:

532

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.9

0.61

1.1

66.7

40.1

Major BPS

94.5

1.11

0.6

92.2

14.6

Major PPT

71.1

0.48

0.9

61.1

39.8

Minor 5ss

38.8

-1.3

3.1

53.1

44.1

Minor BPS

52.3

0.05

1.6

63.52

36.5

Associated Gene:

Gene:

NFATC3

Ensembl Gene ID:

ENSAPLG00000004470

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042261

4620103 - 4682869

62767

ENSAPLT00000004589

4620103 - 4682869

62767