Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4729008_4731357_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4729008 - 4731357

Intron Length:

2350

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGCATA

5'SS Class:

strong_major

3'SS Sequence:

TCGTTTCATGTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTTCAT

U12 Branch Point Sequence:

TCTCGTTTCATG

Flanking Amino Acid:

KMLQCKRVINEVLETVDFVA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.4

0.81

0.9

79.8

35.3

Major BPS

82.2

0.8

1.1

85.7

34.9

Major PPT

74.2

0.54

0.9

70.3

35.4

Minor 5ss

43.1

-0.8

2.9

54.5

43.9

Minor BPS

44.5

-0.5

2.1

51.64

43.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022119

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044549

4728499 - 4732982

4484