About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4738840_4752271_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4738840 - 4752271
Intron Length:
13432

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCATC
5'SS Class:
strong_major
3'SS Sequence:
CTTGTCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TAATACTTGATC
Flanking Amino Acid:
SKKSERSKKKTAQTVLLVVA
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
85.3
32.2
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
85.1
0.79
0.8
76.7
37.4
Minor 5ss
43.9
-0.7
2.9
60.2
44.5
Minor BPS
62.5
0.37
1.5
68.46
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004353
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004501
4738522 - 4754661
16140