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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4752338_4753953_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4752338 - 4753953
Intron Length:
1616

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTTTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
AATTTCATATTC
Flanking Amino Acid:
LVLITCCYAKVLYHLHTKVK
Intron Amino Acid Position:
237

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.7
83.1
30.9
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
78.8
0.65
1
78.2
34
Minor 5ss
29.6
-2.3
2.6
32.5
42.4
Minor BPS
49.3
-0
1.8
62.56
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004353
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004501
4738522 - 4754661
16140