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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4779730_4780635_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4779730 - 4780635
Intron Length:
906

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAACTAAT
5'SS Class:
major
3'SS Sequence:
ACTTTTATCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
GAATCTTCATCT
Flanking Amino Acid:
MTLTHSCNTPCVTGLTAFGQ
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.1
79.7
35.3
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
74
0.54
0.8
66.8
38.7
Minor 5ss
43.1
-0.8
2.7
56.7
42
Minor BPS
50.1
0.08
1.8
67.41
42.9

Associated Gene:

Gene:
DPEP2
Ensembl Gene ID:
ENSAPLG00000004307
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004431
4778126 - 4784141
6016