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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4780664_4780971_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4780664 - 4780971
Intron Length:
308

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGGATC
5'SS Class:
strong_major
3'SS Sequence:
AAATCTGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
TTGTCTGTAAAT
Flanking Amino Acid:
CVTGLTAFGQEVVKEMNRLG
Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
79.7
33.7
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
66.5
0.37
1
63
43.1
Minor 5ss
38.5
-1.3
3.3
52.3
38.8
Minor BPS
58.7
0.35
2.1
80.75
41.3

Associated Gene:

Gene:
DPEP2
Ensembl Gene ID:
ENSAPLG00000004307
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004431
4778126 - 4784141
6016