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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4781648_4782263_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4781648 - 4782263
Intron Length:
616

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGAAGT
5'SS Class:
major
3'SS Sequence:
TATTTTCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
CCTTCTTTGATA
Flanking Amino Acid:
REVVNISTLADHFDYIKKIA
Intron Amino Acid Position:
246

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1.2
69.3
41.1
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
86.8
0.83
0.7
85.8
28.4
Minor 5ss
37.6
-1.4
2.8
50.2
45.7
Minor BPS
67.9
0.56
1.2
69.19
38.1

Associated Gene:

Gene:
DPEP2
Ensembl Gene ID:
ENSAPLG00000004307
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004431
4778126 - 4784141
6016