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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_480558_483528_F

Intron Information:

Intron Rank:
134928
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
480558 - 483528
Intron Length:
2971

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAGTA
5'SS Class:
strong_major
3'SS Sequence:
CACTTCTGAAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTCCTGCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
77.6
30.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
54.1
0.09
1.1
56
37.7
Minor 5ss
33.4
-1.9
3.6
46.9
48.4
Minor BPS
66.3
0.59
1.9
86.45
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022581
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023269
480145 - 501060
20916