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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4815857_4818033_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4815857 - 4818033
Intron Length:
2177

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTTCT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACTTAT
U12 Branch Point Sequence:
CTTTCTTCCACA
Flanking Amino Acid:
YYDRNLALFEEELDIRPKVS
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
83.3
29
Major BPS
65.9
0.39
1.2
57.6
41.3
Major PPT
84.5
0.78
0.7
79.8
25.8
Minor 5ss
42.9
-0.8
2.8
60
44.3
Minor BPS
54.9
0.15
2
71.01
41.7

Associated Gene:

Gene:
SLC12A4
Ensembl Gene ID:
ENSAPLG00000004021
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020712
4815785 - 4839215
23431