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Intron Name: Anas_platyrhynchos_platyrhynchos_12_4831350_4831800_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4831350 - 4831800

Intron Length:

451

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAA|GTAAGTAAC

5'SS Class:

strong_major

3'SS Sequence:

TTCCTCTCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

TACTTTTTAAAA

Flanking Amino Acid:

ACIEGVVLRDKYGDAVNKNL

Intron Amino Acid Position:

398

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.2

0.88

0.9

84.2

26.3

Major BPS

90.4

0.7

90.2

19.3

Major PPT

85.6

0.8

0.7

80.7

24.5

Minor 5ss

37.7

-1.4

2.7

46.1

36.1

Minor BPS

0.47

1.3

69.01

37.3

Associated Gene:

Gene:

SLC12A4

Ensembl Gene ID:

ENSAPLG00000004021

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020712

4815785 - 4839215

23431

ENSAPLT00000004336

4818085 - 4844562

26478