Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4831898_4831950_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

4831898 - 4831950

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

GGA|GCAGGTTTA

5'SS Class:

major

3'SS Sequence:

AGGCAATAGCAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GCCTTAC

U12 Branch Point Sequence:

CCTTACTGGAGC

Flanking Amino Acid:

VIGSFFSTCGDNIIPFLWVF

Intron Amino Acid Position:

431

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

63.1

0.31

1.3

41.4

Major BPS

51.2

0.03

1.2

45.3

39.5

Major PPT

-0.3

1.2

31.4

39.7

Minor 5ss

33.3

-1.9

4.2

44.6

Minor BPS

45.5

-0.3

55.08

43.4

Associated Gene:

Gene:

SLC12A4

Ensembl Gene ID:

ENSAPLG00000004021

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020712

4815785 - 4839215

23431

ENSAPLT00000004336

4818085 - 4844562

26478