Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4833642_4835035_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4833642 - 4835035

Intron Length:

1394

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAGTATT

5'SS Class:

strong_major

3'SS Sequence:

ATGTCCTTCACAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTCAT

U12 Branch Point Sequence:

ATGTCCTTCACA

Flanking Amino Acid:

GMIYKYIEYQGAEKEWGDGI

Intron Amino Acid Position:

551

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.3

0.95

0.9

90.9

28.7

Major BPS

79.7

0.74

79.6

35.6

Major PPT

75.4

0.57

0.9

68.9

36.5

Minor 5ss

41.2

-1

2.9

52.2

44.4

Minor BPS

70.2

0.63

1.7

77.65

39.3

Associated Gene:

Gene:

SLC12A4

Ensembl Gene ID:

ENSAPLG00000004021

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020712

4815785 - 4839215

23431

ENSAPLT00000004336

4818085 - 4844562

26478