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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4839073_4839169_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4839073 - 4839169
Intron Length:
97

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
CTTATCTCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TATTTCTTATCT
Flanking Amino Acid:
IEAEVEVVEMHNSDISAYTY
Intron Amino Acid Position:
809

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
82.5
29.7
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
78.4
0.64
0.8
72.5
32.2
Minor 5ss
35.3
-1.7
3.1
46.4
43
Minor BPS
74.7
0.85
1.5
88.84
35.8

Associated Gene:

Gene:
SLC12A4
Ensembl Gene ID:
ENSAPLG00000004021
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004336
4818085 - 4844562
26478