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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4839117_4839169_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4839117 - 4839169
Intron Length:
53

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGTTTGAT
5'SS Class:
major
3'SS Sequence:
CTTATCTCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TATTTCTTATCT
Flanking Amino Acid:
SPNFTLREKRCTIVISQHIL
Intron Amino Acid Position:
864

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.7
0.4
1
64.7
34.4
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
78.4
0.64
0.8
72.5
32.2
Minor 5ss
35.2
-1.7
3.2
45.5
45
Minor BPS
74.7
0.85
1.5
88.84
35.8

Associated Gene:

Gene:
SLC12A4
Ensembl Gene ID:
ENSAPLG00000004021
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020712
4815785 - 4839215
23431