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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4839278_4840091_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4839278 - 4840091
Intron Length:
814

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTCAT
5'SS Class:
strong_major
3'SS Sequence:
GCGTGCCCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAA
U12 Branch Point Sequence:
AATAAACTAAGT
Flanking Amino Acid:
RLTKTEREREAQLVKDRHSI
Intron Amino Acid Position:
845

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
79.7
35.4
Major BPS
62
0.3
1
62.3
30.4
Major PPT
62.8
0.29
0.9
55
36.5
Minor 5ss
42
-0.9
2.9
58.1
46.5
Minor BPS
40.7
-0.6
2.2
60.03
42.2

Associated Gene:

Gene:
SLC12A4
Ensembl Gene ID:
ENSAPLG00000004021
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004336
4818085 - 4844562
26478