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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4928032_4928866_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4928032 - 4928866
Intron Length:
835

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAGATA
5'SS Class:
major
3'SS Sequence:
CTGTTGTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAC
U12 Branch Point Sequence:
AGCTCATTAACC
Flanking Amino Acid:
LWKGVKTSGKVVWITATLPY
Intron Amino Acid Position:
263

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.1
72
39.3
Major BPS
69.5
0.49
1
71.3
30.3
Major PPT
78.9
0.65
0.9
73
37.4
Minor 5ss
33.8
-1.8
3.6
47.6
48.1
Minor BPS
66.3
0.49
1.6
71.09
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003879
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004101
4901070 - 4965524
64455