Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4941322_4945108_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4941322 - 4945108

Intron Length:

3787

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGTGTC

5'SS Class:

strong_major

3'SS Sequence:

CCTTTGTCTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTATAAT

U12 Branch Point Sequence:

CAATGTATAATC

Flanking Amino Acid:

TVWKICPVFKGVGYAVILIA

Intron Amino Acid Position:

137

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.1

0.87

0.9

81.2

32.7

Major BPS

70.1

0.5

1.3

72.3

40.4

Major PPT

78.9

0.65

0.8

31.8

Minor 5ss

35.9

-1.6

3.5

51.5

45.7

Minor BPS

45.5

-0.3

1.9

52.81

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000003879

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004101

4901070 - 4965524

64455