Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4989091_4989348_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4989091 - 4989348

Intron Length:

258

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTAAGTTAC

5'SS Class:

strong_major

3'SS Sequence:

TTGTATTTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTGTAT

U12 Branch Point Sequence:

TTTTTTGTATTT

Flanking Amino Acid:

DADETGKLSYDEFKDFALKH

Intron Amino Acid Position:

437

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.3

0.88

0.9

78.8

31.5

Major BPS

71.5

0.53

1.4

71.7

44.6

Major PPT

86.8

0.83

0.8

84.8

35.4

Minor 5ss

-1

2.8

53.4

43.8

Minor BPS

50.7

0.1

2.2

78.46

Associated Gene:

Gene:

LPCAT2

Ensembl Gene ID:

ENSAPLG00000003809

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018603

4988846 - 5016851

28006

ENSAPLT00000003960

4988846 - 5013172

24327