About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4998228_4998927_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4998228 - 4998927
Intron Length:
700

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGGGAA
5'SS Class:
major
3'SS Sequence:
CATGTTTGCATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATAGAA
U12 Branch Point Sequence:
TCTCCCTCATGT
Flanking Amino Acid:
VEFTKISKKLNLKWNHVREQ
Intron Amino Acid Position:
305

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
72.1
33
Major BPS
62.2
0.3
1
59
38
Major PPT
65.5
0.35
1
60.7
40
Minor 5ss
30.2
-2.3
3.5
37.5
41.7
Minor BPS
47.9
-0
2.1
69.57
46.9

Associated Gene:

Gene:
LPCAT2
Ensembl Gene ID:
ENSAPLG00000003809
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018603
4988846 - 5016851
28006
ENSAPLT00000003960
4988846 - 5013172
24327