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Intron Name: Anas_platyrhynchos_platyrhynchos_12_5046517_5050190_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5046517 - 5050190

Intron Length:

3674

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTAAGAGGC

5'SS Class:

major

3'SS Sequence:

CAATTTGCTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTAAAT

U12 Branch Point Sequence:

AGATATGTAACG

Flanking Amino Acid:

TYIFAGDRYWKYNEEKKKME

Intron Amino Acid Position:

593

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.1

0.69

67.1

37.2

Major BPS

73.5

0.58

79.3

29.4

Major PPT

69.1

0.43

0.9

66.4

40.2

Minor 5ss

32.5

-2

3.4

Minor BPS

45.8

-0.4

2.2

52.41

41.9

Associated Gene:

Gene:

MMP2

Ensembl Gene ID:

ENSAPLG00000003788

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003873

5045156 - 5080268

35113