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Intron Name: Anas_platyrhynchos_platyrhynchos_12_5050351_5052287_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5050351 - 5052287

Intron Length:

1937

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACTGGTT

5'SS Class:

major

3'SS Sequence:

TTACTTTTCTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAATAAT

U12 Branch Point Sequence:

TGTTTCTTACTT

Flanking Amino Acid:

PQDEKAVFFSGNEYWVYTAS

Intron Amino Acid Position:

540

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.1

0.52

1.1

69.9

40.6

Major BPS

0.75

78.6

Major PPT

80.9

0.7

80.9

30.8

Minor 5ss

34.2

-1.8

3.9

55.6

48.6

Minor BPS

69.5

0.69

1.6

83.97

37.3

Associated Gene:

Gene:

MMP2

Ensembl Gene ID:

ENSAPLG00000003788

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014138

5048449 - 5080268

31820

ENSAPLT00000003873

5045156 - 5080268

35113