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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_5060095_5062139_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5060095 - 5062139
Intron Length:
2045

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGGGA
5'SS Class:
strong_major
3'SS Sequence:
TCATTTTCCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTTCCGATCATT
Flanking Amino Acid:
DKKYGFCPETAMSTVGGNSE
Intron Amino Acid Position:
333

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
65.8
40
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
80.7
0.69
0.8
76
32.4
Minor 5ss
28.7
-2.4
3.5
34.8
43.6
Minor BPS
44.9
-0.3
2.6
74.18
42.8

Associated Gene:

Gene:
MMP2
Ensembl Gene ID:
ENSAPLG00000003788
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014138
5048449 - 5080268
31820
ENSAPLT00000003873
5045156 - 5080268
35113