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Intron Name: Anas_platyrhynchos_platyrhynchos_12_5062314_5068259_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5062314 - 5068259

Intron Length:

5946

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGT|GTAAGTAGA

5'SS Class:

major

3'SS Sequence:

GGTTTCCCAACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACTGAC

U12 Branch Point Sequence:

GGTTTCCCAACA

Flanking Amino Acid:

DGKYGFCPHESLFTMGGNGD

Intron Amino Acid Position:

275

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.7

0.58

1.1

40.9

Major BPS

73.6

0.59

0.9

63.3

35.6

Major PPT

69.3

0.43

63.2

38.4

Minor 5ss

37.1

-1.5

2.8

43.2

43.8

Minor BPS

50.7

0.02

1.9

66.09

39.7

Associated Gene:

Gene:

MMP2

Ensembl Gene ID:

ENSAPLG00000003788

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014138

5048449 - 5080268

31820

ENSAPLT00000003873

5045156 - 5080268

35113