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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_5072397_5074448_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5072397 - 5074448
Intron Length:
2052

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGCCT
5'SS Class:
major
3'SS Sequence:
TTTTACCTCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TGTTTCTTAACT
Flanking Amino Acid:
PKWEKNHITYRIIGYTPDLD
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.1
60
44.4
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
71.3
0.48
1
71.5
33
Minor 5ss
32.4
-2
3.5
49
46.7
Minor BPS
88.3
1.28
0.9
96.56
28.2

Associated Gene:

Gene:
MMP2
Ensembl Gene ID:
ENSAPLG00000003788
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003873
5045156 - 5080268
35113
ENSAPLT00000014138
5048449 - 5080268
31820