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Intron Name: Anas_platyrhynchos_platyrhynchos_12_5074676_5079216_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5074676 - 5079216

Intron Length:

4541

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTAAGTGTT

5'SS Class:

strong_major

3'SS Sequence:

TTTTCCCTTCAAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTAAA

U12 Branch Point Sequence:

TTTCCCTTCAAG

Flanking Amino Acid:

TPKTDKELAVQYLNKYYGCP

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.6

0.96

0.8

27.7

Major BPS

77.8

0.69

78.2

31.8

Major PPT

0.63

76.2

32.7

Minor 5ss

38.8

-1.3

3.4

43.6

Minor BPS

59.2

0.14

70.4

42.3

Associated Gene:

Gene:

MMP2

Ensembl Gene ID:

ENSAPLG00000003788

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014138

5048449 - 5080268

31820

ENSAPLT00000003873

5045156 - 5080268

35113