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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_5179575_5218973_F

Intron Information:

Intron Rank:
140364
Intron Class:
major
Intron Phase:
Intron Coordinates:
5179575 - 5218973
Intron Length:
39399

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAGGACTT
5'SS Class:
major
3'SS Sequence:
CCTTATTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
CCTTCCTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.9
0.3
1.1
60.5
44.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
85.3
0.8
0.8
79.9
31.7
Minor 5ss
38.7
-1.3
3.6
62.1
43.3
Minor BPS
68.3
0.65
1.6
79.24
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025507
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034380
5178441 - 5219185
40745