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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_5403085_5466736_F

Intron Information:

Intron Rank:
145839
Intron Class:
major
Intron Phase:
Intron Coordinates:
5403085 - 5466736
Intron Length:
63652

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
CTATTTTCCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
CTTTCCTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
80.2
0.68
0.8
73.1
37.1
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
78.6
0.98
1.5
91.83
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028593
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036926
5402925 - 5473333
70409