About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_5468412_5472074_F

Intron Information:

Intron Rank:
145838
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
5468412 - 5472074
Intron Length:
3663

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
GTGTTAAACAAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TGTTTTTTCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
50.9
0.02
1.2
50.2
41.4
Minor 5ss
38.8
-1.3
2.8
48.8
47
Minor BPS
66.4
0.6
1.7
83.79
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028593
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036926
5402925 - 5473333
70409
ENSAPLT00000021888
5438928 - 5473333
34406