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Intron Name: Anas_platyrhynchos_platyrhynchos_12_5552996_5553192_F

Intron Information:

Intron Rank:

148951

Intron Class:

major

Intron Phase:

Intron Coordinates:

5552996 - 5553192

Intron Length:

197

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGTGAT

5'SS Class:

strong_major

3'SS Sequence:

TTTCCCTCTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTAAT

U12 Branch Point Sequence:

AATTAGCTAATG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.4

0.93

0.8

83.2

28.5

Major BPS

84.4

0.85

1.1

34.5

Major PPT

85.6

0.8

0.7

77.5

31.2

Minor 5ss

34.5

-1.8

3.3

45.9

43.7

Minor BPS

42.9

-0.6

2.4

52.9

41.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030125

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022736

5552830 - 5562888

10059