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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_5553251_5554073_F

Intron Information:

Intron Rank:
148952
Intron Class:
major
Intron Phase:
Intron Coordinates:
5553251 - 5554073
Intron Length:
823

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAGGGTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTATGAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATGAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
78.7
35.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
77
0.61
1
74.2
39.4
Minor 5ss
30.9
-2.2
4.5
54.5
49.7
Minor BPS
66.5
0.51
1.7
81.43
33.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030125
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022736
5552830 - 5562888
10059