Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_5561530_5561655_F

Intron Information:

Intron Rank:

148954

Intron Class:

major

Intron Phase:

Intron Coordinates:

5561530 - 5561655

Intron Length:

126

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTATGTTGA

5'SS Class:

strong_major

3'SS Sequence:

TTGTGTGTTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATATCAT

U12 Branch Point Sequence:

TCATGTATAATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.4

0.88

0.9

76.7

34.9

Major BPS

79.4

0.73

80.1

Major PPT

0.63

69.2

46.1

Minor 5ss

45.7

-0.5

2.5

58.5

Minor BPS

49.1

0.01

69.09

42.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030125

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045465

5560357 - 5563151

2795

ENSAPLT00000022736

5552830 - 5562888

10059