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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_5564775_5566223_F

Intron Information:

Intron Rank:
127714
Intron Class:
major
Intron Phase:
Intron Coordinates:
5564775 - 5566223
Intron Length:
1449

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAATTA
5'SS Class:
major
3'SS Sequence:
ATGCTTTATGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAG
U12 Branch Point Sequence:
ACAGCCTTATCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
72.8
32.3
Major BPS
64.3
0.36
1.6
74
41.2
Major PPT
71
0.47
0.9
66.7
39
Minor 5ss
47
-0.3
2.9
64.6
46.8
Minor BPS
55.8
0.18
1.7
62.37
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018859
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023570
5564740 - 5581698
16959