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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_5581322_5602515_F

Intron Information:

Intron Rank:
127711
Intron Class:
major
Intron Phase:
Intron Coordinates:
5581322 - 5602515
Intron Length:
21194

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTGAT
5'SS Class:
strong_major
3'SS Sequence:
ATCTTTATTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
ATATCTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
77.5
32.9
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
80
0.68
0.8
78.5
34
Minor 5ss
27.5
-2.6
3.4
39.1
46.7
Minor BPS
66
0.58
1.5
78.98
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018859
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018805
5571949 - 5603225
31277