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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_568881_571275_F

Intron Information:

Intron Rank:
143718
Intron Class:
major
Intron Phase:
Intron Coordinates:
568881 - 571275
Intron Length:
2395

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
GCTCCCATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
GTGATTCTAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
86
23.6
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
74.5
0.55
0.9
70
35.1
Minor 5ss
36.8
-1.5
2.7
42.6
38.4
Minor BPS
46.2
-0.4
1.7
48.73
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027440
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038597
568742 - 592527
23786