About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_5698236_5722623_F

Intron Information:

Intron Rank:
146594
Intron Class:
major
Intron Phase:
Intron Coordinates:
5698236 - 5722623
Intron Length:
24388

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCTCT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAA
U12 Branch Point Sequence:
TCCTTTCCAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.5
33.5
Major BPS
68.1
0.45
1.3
78.7
34.9
Major PPT
90.4
0.91
0.6
88.5
21
Minor 5ss
41
-1
3
56.7
47.6
Minor BPS
48.6
-0
1.9
67.83
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028978
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035438
5697595 - 5723632
26038