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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_5711070_5711201_R

Intron Information:

Intron Rank:
147510
Intron Class:
major
Intron Phase:
Intron Coordinates:
5711070 - 5711201
Intron Length:
132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTTGCTATCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.8
80.6
31.8
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
87.3
0.84
0.7
85.3
27.7
Minor 5ss
35.5
-1.6
3.3
47.5
42.3
Minor BPS
49.2
0.02
2.1
76.08
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026717
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047481
5710077 - 5711333
1257