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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_571441_591291_F

Intron Information:

Intron Rank:
143719
Intron Class:
major
Intron Phase:
Intron Coordinates:
571441 - 591291
Intron Length:
19851

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
CATCCTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTAACATCAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
87.2
27
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
81.4
0.71
0.8
72.6
37.2
Minor 5ss
36.1
-1.6
3
50.2
45.8
Minor BPS
51.5
0.03
1.8
66.08
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027440
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038597
568742 - 592527
23786