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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_5729743_5731385_F

Intron Information:

Intron Rank:
140740
Intron Class:
major
Intron Phase:
Intron Coordinates:
5729743 - 5731385
Intron Length:
1643

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
CTTTTGTATCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAA
U12 Branch Point Sequence:
ACTTTTGTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.65
1.1
80.4
34
Major BPS
70.7
0.51
0.9
61.7
35.7
Major PPT
76.8
0.6
0.9
70
40.6
Minor 5ss
42.2
-0.9
2.9
61.3
43
Minor BPS
47.5
-0.1
2.2
68.89
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025767
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043656
5729367 - 5748248
18882
ENSAPLT00000039225
5729367 - 5747834
18468