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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_5759651_5759739_F

Intron Information:

Intron Rank:
140736
Intron Class:
major
Intron Phase:
Intron Coordinates:
5759651 - 5759739
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGTTGA
5'SS Class:
major
3'SS Sequence:
TTTGAATTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TGTTTTTGAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
70.5
36.3
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
71.2
0.48
0.9
62.9
43
Minor 5ss
41.4
-1
2.8
50.8
41.1
Minor BPS
67.2
0.62
1.3
80.96
34.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025767
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034149
5759196 - 5764635
5440