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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_5761808_5764136_F

Intron Information:

Intron Rank:
140738
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
5761808 - 5764136
Intron Length:
2329

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
GTAAAACACAGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
GTACTTATAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.9
87
30
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
42.5
-0.4
1.7
36.2
39.3
Minor 5ss
37
-1.5
2.8
43.1
43.9
Minor BPS
50.8
0.1
1.5
67.65
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025767
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034149
5759196 - 5764635
5440