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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_5798828_5803314_F

Intron Information:

Intron Rank:
144628
Intron Class:
major
Intron Phase:
Intron Coordinates:
5798828 - 5803314
Intron Length:
4487

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATAT
5'SS Class:
strong_major
3'SS Sequence:
TTTACTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTATTTTTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
80.1
28.2
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
86.4
0.82
0.7
81.3
30.6
Minor 5ss
39
-1.2
3.2
55.7
48.5
Minor BPS
64.3
0.53
1.5
79.64
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027936
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034173
5797687 - 5804983
7297
ENSAPLT00000029301
5797687 - 5808960
11274