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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_5894568_5896675_R

Intron Information:

Intron Rank:
134443
Intron Class:
major
Intron Phase:
Intron Coordinates:
5894568 - 5896675
Intron Length:
2108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTTA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAC
U12 Branch Point Sequence:
GTATTGACAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
86.5
23.8
Major BPS
78.7
0.71
0.9
69.3
37.7
Major PPT
83.8
0.76
0.7
82
30
Minor 5ss
43.1
-0.8
2.9
58.1
46.5
Minor BPS
42.7
-0.5
2.3
58.11
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019611
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028028
5826774 - 5900034
73261