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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_5896778_5899951_R

Intron Information:

Intron Rank:
134444
Intron Class:
major
Intron Phase:
Intron Coordinates:
5896778 - 5899951
Intron Length:
3174

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGGG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTTATCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTTTACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
69.5
41.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
84.5
0.78
0.8
85
28.1
Minor 5ss
31.4
-2.1
3.2
40.6
45.6
Minor BPS
65
0.55
1.6
84.12
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019611
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028028
5826774 - 5900034
73261