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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_5927137_5931693_F

Intron Information:

Intron Rank:
147143
Intron Class:
major
Intron Phase:
Intron Coordinates:
5927137 - 5931693
Intron Length:
4557

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTACC
5'SS Class:
major
3'SS Sequence:
CTTCTCTCCGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAA
U12 Branch Point Sequence:
TTAAGCACAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1.1
72.7
36.5
Major BPS
70.7
0.51
0.9
61.7
35.7
Major PPT
81.5
0.71
0.7
76.7
25.3
Minor 5ss
39.4
-1.2
2.3
47.3
41.1
Minor BPS
45.3
-0.3
2.2
62.78
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029254
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046155
5926972 - 5933080
6109